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The East Fork Des Moines River Watershed covers 839,518 acres, which includes Minnesota's Martin and Jackson counties.

The Lower St. Croix Watershed covers 585,735 acres and is located in northwest Wisconsin and east-central Minnesota.

The Cedar River Watershed in Minnesota encompasses 454,029 acres in Mower, Freeborn, Dodge, and Steele counties. This watershed covers prime agricultural land with many streams and drainage ditches flowing into the river.